Swirled Pumpkin Cream Cheese Muffins – A Cozy Fall Treat

There’s something magical about fall mornings—the crisp air, the cozy sweaters, and the sweet scent of pumpkin spice wafting through the kitchen. These Swirled Pumpkin Cream Cheese Muffins capture all that autumnal warmth in every soft, swirled bite. Each muffin is tender, moist, and packed with pumpkin flavor, while the cream cheese swirl adds a rich, tangy contrast that makes them irresistible. Whether you’re baking for a weekend brunch, school treats, or simply to fill your home with the aroma of cinnamon and nutmeg, these muffins are the essence of cozy comfort.

The best part? They’re surprisingly easy to make. With just a few pantry staples and a swirl of creativity, you can turn simple ingredients into something that feels straight out of a bakery.

Ingredients:

  • 1 ¾ cups all-purpose flour
  • 1 teaspoon baking soda
  • ½ teaspoon baking powder
  • ½ teaspoon salt
  • 2 teaspoons ground cinnamon
  • ½ teaspoon ground nutmeg
  • ¼ teaspoon ground cloves
  • 1 cup canned pumpkin puree
  • 1 cup granulated sugar
  • ½ cup vegetable oil
  • 2 large eggs
  • 1 teaspoon pure vanilla extract
  • Cream Cheese Filling:
  • 8 oz cream cheese, softened
  • ⅓ cup granulated sugar
  • 1 large egg yolk
  • ½ teaspoon vanilla extract

Instructions:

  1. Preheat and Prep: Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or lightly grease each cup.
  2. Mix Dry Ingredients: In a large bowl, whisk together flour, baking soda, baking powder, salt, cinnamon, nutmeg, and cloves.
  3. Mix Wet Ingredients: In another bowl, whisk pumpkin puree, sugar, oil, eggs, and vanilla until smooth.
  4. Combine: Gently fold the dry ingredients into the wet mixture until just combined—don’t overmix.
  5. Prepare Cream Cheese Filling: In a small bowl, beat the softened cream cheese, sugar, egg yolk, and vanilla until creamy and smooth.
  6. Assemble Muffins: Fill each muffin cup about ⅔ full with pumpkin batter. Drop a spoonful of the cream cheese mixture on top of each.
  7. Swirl: Use a toothpick or knife to gently swirl the cream cheese into the pumpkin batter for a marbled effect.
  8. Bake: Bake for 18–22 minutes or until a toothpick inserted into the center comes out clean (avoid the cream cheese section when testing).
  9. Cool: Let muffins cool in the pan for 5 minutes before transferring them to a wire rack to cool completely.

Tips & Tricks

  • For extra flavor, add a dash of ground ginger or allspice to the pumpkin batter.
  • Swirl lightly—overmixing can blend the batters too much.
  • Make sure cream cheese is fully softened for the smoothest swirl.

Variations

  • Chocolate Pumpkin Swirl: Add a handful of mini chocolate chips to the pumpkin batter.
  • Crumble Topping: Combine butter, brown sugar, and flour for a crunchy streusel topping.
  • Mini Muffins: Bake smaller versions for parties or snacks—reduce bake time to 12–14 minutes.

Swirled Pumpkin Cream Cheese Muffins

Moist pumpkin muffins with a rich cream cheese swirl—perfectly spiced and irresistibly soft for a cozy fall treat.
Prep Time 15 minutes
Cook Time 22 minutes
Total Time 37 minutes
Servings: 12 muffins
Course: Breakfast, Dessert
Cuisine: American, Fall
Calories: 240

Ingredients
  

Pumpkin Batter
  • 1 ¾ cups all-purpose flour
  • 1 teaspoon baking soda
  • ½ teaspoon baking powder
  • ½ teaspoon salt
  • 2 teaspoons ground cinnamon
  • ½ teaspoon ground nutmeg
  • ¼ teaspoon ground cloves
  • 1 cup pumpkin puree
  • 1 cup granulated sugar
  • ½ cup vegetable oil
  • 2 large eggs
  • 1 teaspoon vanilla extract
Cream Cheese Filling
  • 8 oz cream cheese, softened
  • cup granulated sugar
  • 1 large egg yolk
  • ½ teaspoon vanilla extract

Equipment

  • Mixing bowls
  • Muffin tin
  • Wire rack
  • Hand mixer or whisk

Method
 

  1. Preheat oven to 350°F (175°C). Line muffin tin with liners or grease cups.
  2. Whisk dry ingredients together: flour, baking soda, baking powder, salt, cinnamon, nutmeg, and cloves.
  3. In another bowl, mix pumpkin puree, sugar, oil, eggs, and vanilla until smooth.
  4. Combine wet and dry mixtures until just combined.
  5. Beat cream cheese filling ingredients until smooth.
  6. Fill each muffin cup ⅔ with batter, then add cream cheese swirl and marble with toothpick.
  7. Bake 18–22 minutes until set and golden brown.
  8. Cool on wire rack before serving.

Notes

Perfect for cozy mornings, holidays, or fall brunches.

Serving Suggestions
These muffins are divine when served warm with a cup of spiced chai or hot coffee. Add a light dusting of powdered sugar or drizzle of maple glaze for presentation. They also make an excellent breakfast treat or a sweet addition to a fall brunch spread.

Storage Information
Store muffins in an airtight container at room temperature for up to 2 days or refrigerate for up to 5 days. To freeze, wrap each muffin individually and store in a freezer bag for up to 2 months. Reheat in the microwave or oven before serving.

FAQ

  • Can I use homemade pumpkin puree? Yes! Just make sure it’s thick and well-drained to avoid excess moisture.
  • Do these need to be refrigerated? Because of the cream cheese swirl, it’s best to store them in the fridge after the first day.
  • Can I make them gluten-free? Substitute all-purpose flour with your favorite 1:1 gluten-free blend.

History / Fun Facts
Pumpkin muffins date back to early American colonial baking traditions, where pumpkin was a readily available ingredient. Cream cheese swirls were added much later—thought to be inspired by classic cheesecake recipes that made their way into American kitchens in the 1950s. Together, they make a pairing that celebrates the perfect balance of sweet, spiced, and creamy textures.

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